PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG001200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29844 Da    PI: 9.4938
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG001200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++
  Pavir.2KG001200.1.p  9 KRIENKINRQVTFSKRRNGLLKKANEISVLCDAEVAVIVFSPKGKLYEYAT 59
                         79***********************************************86 PP

2K-box109.83e-3682173899
                K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          s+e + + ++++e++kLk++i ++q+ ++hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l++e+i+elqkke++lqeenkaL+k+
  Pavir.2KG001200.1.p  82 SAEPESEVNWCHEYRKLKAKIGTIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMVESISELQKKERSLQEENKALQKE 171
                          555667789********************************************************************************9 PP

                K-box  98 le 99 
                          l+
  Pavir.2KG001200.1.p 172 LA 173
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.842161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-34291IPR002100Transcription factor, MADS-box
CDDcd002652.68E-41276No hitNo description
PRINTSPR004042.8E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-3087172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.19888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KANEISVLCD AEVAVIVFSP KGKLYEYATD  60
DRMDKILERY ECYSYAEKAL ISAEPESEVN WCHEYRKLKA KIGTIQKCHK HLMGEDLESL  120
NLKELQQLEQ QLESSLKHIR SRKSHLMVES ISELQKKERS LQEENKALQK ELADRQKAAA  180
SRPQVQWDPH TQAQTSSSSS SFLMRQDQQP LQPPQNIWYP PVTGERGEEA AAVAQRQPGQ  240
AQPQLRIGSL PPWMTSHLNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q5e-22174173Myocyte-specific enhancer factor 2B
1tqe_R5e-22174173Myocyte-specific enhancer factor 2B
1tqe_S5e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.159100.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630610.0EU963061.1 Zea mays clone 257029 MADS-box transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105333.21e-142zea apetala homolog 1
SwissprotQ6Q9I21e-126MAD15_ORYSJ; MADS-box transcription factor 15
TrEMBLB6TDJ61e-147B6TDJ6_MAIZE; MADS-box transcription factor 15
STRINGGRMZM2G148693_P021e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-69MIKC_MADS family protein